MamuSNP

Welcome to mamusnp.genomecenter.ucdavis.edu. This site is designed to be a resource for screening and designing primers for SNP's designed using 454 sequences. Below you can find downloads of potential SNP candidates selected from our analysis pipline as well as tools to further screen and design primers from these candidates.



Downloads:

Tools:






454 Alignment Query


Query a 454 sequence to return sequence specific information.
Options include: Please enter in a list of 454 ID's separated by space, newline, or comma. eg. D8YOWMI02JQ9FL D8YOWMI01AS7RW


 454 Sequence
 454 Quality
 454 Blast Result



Rhesus Macaque Aligment Query


Query Rhesus Macaque chromosome and location pairs to return sequence specific information.
Options include: Please enter in a list Chromosome_Position pairs. eg. 1_213874044 1_41328442


 Rhesus Macacque Sequence
 Rhesus Macaque Quality
 Rhesus Macaque Blast Results



Rhesus Macaquue Sequence Query


Query Rhesus Macaque chromosome and location pairs for a fasta display of the sequence.
Option: Please enter in a list of Chromosome_Position pairs. eg. 1_213874044 X_41328442


Span



454 Sequence Query


Query 454 sequence for a fasta display of the sequence.

Please enter in a list 454 sequence identifiers eg. D8YOWMI02JQ9FL D8YOWMI01AS7RW